Feature/issue 236: Update track ingest to allow UAT query of CMR #240
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# Conflicts: # pyproject.toml
* changelog * update examples, remove load_data readme, info moved to wiki
* Reorganize timeseries code to prep for Accept header * Enable Accept header to return response of specific content-type * Fix whitespace and string continuation * Make error handling consistent and add an additional test where a reach can't be found * Update changelog with issue for unreleased version * Add 415 status code to API definition * Few minor cleanup items * Few minor cleanup items * Update to aiohttp@3.9.4 * Fix dependencies --------- Co-authored-by: Frank Greguska <89428916+frankinspace@users.noreply.github.com>
* Enable payload compression * Update changelog with issue --------- Co-authored-by: Frank Greguska <89428916+frankinspace@users.noreply.github.com>
…feature (#177) * Reorganize timeseries code to prep for Accept header * Enable Accept header to return response of specific content-type * Fix whitespace and string continuation * Make error handling consistent and add an additional test where a reach can't be found * Update changelog with issue for unreleased version * Add 415 status code to API definition * Few minor cleanup items * Few minor cleanup items * Update to aiohttp@3.9.4 * Fix dependencies * Update required query parameters based on current API functionality * Enable return of 'compact' GeoJSON response * Fix linting and add test data * Update documentation for API accept headers and compact GeoJSON response * Fix references to incorrect Accept header examples --------- Co-authored-by: Frank Greguska <89428916+frankinspace@users.noreply.github.com>
* Provide introduction to timeseries endpoint * Remove _units in fields list * Fix typo * Update examples with Accept headers and compact query parameter * Add issue to changelog * Fix typo in timeseries documentation * Update pymysql * Update pymysql * Provide clarity on accept headers and request parameter fields
* API Gateway Lambda authorizer to facilitate API keys and usage plans * Unit tests to test Lambda authorizer * Fix terraform file formatting * API Gateway Lambda Authorizer - Lambda function - API Keys and Authorizer definition in OpenAPI spec - API gateway API keys - API gateway usage plans - SSM parameters for API keys * Fix trailing whitespace * Set default region environment variable * Fix SNYK vulnerabilities * Add issue to changelog * Implement custom trusted partner header x-hydrocron-key * Update cryptography for SNYK vulnerability * Update documentation to include API key usage * Update quota and throttle settings for API Gateway * Update API keys documentation to indicate to be implemented * Move API key lookup to Lambda INIT * Remove API key authentication and update API key to x-hydrocron-key
* Update pylint to deal with errors and fix collection reference * Initial CMR and Hydrocron queries - Includes placeholders for other operations needed to track granule ingest. - GranuleUR query for Hydrocron tables. * Add and set up vcrpy for testing CMR API query * Test track ingest operations - Test CMR and hydrocron queries - Test granuleUR query - Update database to include granuleUR GSI * Update to use track_ingest naming consistently * Initial Lambda function and IAM role definition * Replace deprecated path function with as_file * Add SSM read IAM permissions * Add DynamoDB read permissions * Update track ingest lambda memory * Remove duplicate IAM permissions * Add in permissions to query index * Update changelog * Update changelog description * Use python_cmr for CMR API queries
* Update intro.md with DOI * Update overview.md with DOI
* add code to handle prior lakes shapefiles, add test prior lake data * update terraform to add prior lake table * fix tests, change to smaller test data file, changelog * linting * reconfigure main load_data method to make more readable and pass linting * lint * lint * fix string casting to lower storage req & update test responses to handle different rounding pattern in coords * update load benchmarking function for linting and add unit test * try parent collection for lakes * update version parsing for parent collection * fix case error * fix lake id reference * add logging to troubleshoot too large features * add item size logging and remove error raise for batch write * clean up logging statements & move numeric_columns assignment * update batch logging statement * Rename constant * Fix temp dir security risk https://rules.sonarsource.com/python/RSPEC-5443/ * Fix temp dir security risk https://rules.sonarsource.com/python/RSPEC-5443/ * fix code coverage calculation --------- Co-authored-by: Frank Greguska <89428916+frankinspace@users.noreply.github.com>
…214) * Define track ingest database and IAM permissions * Update changelog with issue * Modify table structure to support sparse status index * Updated to only apply PITR in ops --------- Co-authored-by: Frank Greguska <89428916+frankinspace@users.noreply.github.com>
* add functions to handle null geometries and convert polygons to points * update doi in docs * fix fill null geometries * fix tests and update changelog
) * adjust lambdas to populate track ingest table on granule load * changelog * remove test cnm * lint * change error caught when handling checksum * update lambda role permissions to write to track ingest table * fix typo on lake table terraform * set default fill values for checksum and rev date in track status * fix checksum handling in bulk load data * lint * add logging to debug
…nto release/1.4.0
…nto feature/issue-236
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Please see #238 for the latest testing in SIT. |
…re/issue-211 # Conflicts: # CHANGELOG.md # docs/examples.md # hydrocron/api/data_access/db.py # hydrocron/db/track_ingest.py # terraform/hydrocron-apigw.tf # terraform/hydrocron-iam.tf # terraform/hydrocron-lambda.tf # tests/conftest.py # tests/test_data/query_cmr_granule_results.json # tests/test_track_ingest.py
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Github Issue: #236
Description
Update track ingest to allow UAT query of CMR to support querying and loading data in different venues.
Overview of work done
python_cmrquery to include UATmodefunction andbearer_token.EARTHDATA_USERNAMEandEARTHDATA_PASSWORDenvironment variables.Overview of verification done
New and existing unit tests pass.
Overview of integration done
See #238.
PR checklist:
See Pull Request Review Checklist for pointers on reviewing this pull request