Bifrost bridge for large-scale transfer of bioimage data using an OMERO server. A simplified Python CLI tool and package to transfer image data/metadata from and to an OMERO server.
- Python
3.8 - typer
0.9.0 - rich
13.5.2 - zeroc-ice
3.6.5 - omero-py
5.13.1(downgraded from5.15.0given ezomero2.1.0requirements) - omero-upload
0.4.0 - ezomero
2.1.0
pip install omero-bifrost
Type omero-bifrost --help to see the full range of commands and subcommands.
To install packages in requirements.txt in the current conda env.:
pip install -r requirements.txt
To test package, install using pip:
pip install -e .