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Jupyter notebooks to calculate the root diversity score (RDS)

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Supplementary Scripts for

Nature Genetics 52, 692-700 2020

Johannes G. Reiter, Wei-Ting Hung, I-Hsiu Lee, Shriya Nagpal, Peter Giunta, Sebastian Degner, Gang Liu, Emma Wassenaar, William Jeck, Martin S. Taylor, Alexander A. Farahani, Hetal D. Marble, Simon Knott, Onno Kranenburg, Jochen K. Lennerz, Kamila Naxerova

Highlighted in Nature Genetics News and Views by T.A. Graham and D. Shibata

Supplementary Script 1 performs basic phylogenetic analysis presented in Figure 1.

Supplementary Script 2 provides an implementation of the root diversity score (RDS) and produces various panels in Figures 1 and 2.

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