cloud and db handling updates #427
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| name: Syntax_check | |
| on: [push] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v1 | |
| - name: Help_test | |
| run: curl -s https://get.nextflow.io | bash && ./nextflow run phage.nf --help | |
| - name: fasta dry run whole wf | |
| run: | | |
| ./nextflow run phage.nf --fasta ./test-data/stub_genome.fasta -stub -profile stub --cores 2 --max_cores 2 | |
| - name: fasta dry run identify only | |
| run: | | |
| ./nextflow run phage.nf --fasta ./test-data/stub_genome.fasta -stub -profile stub --cores 2 --max_cores 2 --identify | |
| - name: fasta dry run annotate only | |
| run: | | |
| ./nextflow run phage.nf --fasta ./test-data/stub_genome.fasta -stub -profile stub --cores 2 --max_cores 2 --annotate | |
| - name: fasta dry run remove some tools 1 | |
| run: | | |
| ./nextflow run phage.nf --fasta ./test-data/stub_genome.fasta -stub -profile stub --cores 2 --max_cores 2 --dv --mp --pp --sm --vb | |
| - name: fasta dry run remove some tools 2 | |
| run: | | |
| ./nextflow run phage.nf --fasta ./test-data/stub_genome.fasta -stub -profile stub --cores 2 --max_cores 2 --vf --vn --vs --ph --vs2 --sk |