dump bio.tools data in a single bioschemas file #253

	name: dump bio.tools data in a single bioschemas file

	on:
	workflow_dispatch:
	schedule:
	- cron: '0 2 * * 0'

	jobs:
	build-bioschemas:
	runs-on: ubuntu-latest

	steps:
	- uses: actions/checkout@v2
	with:
	path: content

	- uses: actions/checkout@v2
	with:
	repository: bio-tools/content-ecosystem-utils
	path: content-ecosystem-utils

	- name: Setup Python
	uses: actions/setup-python@v1
	with:
	python-version: "3.7"

	- name: Install dependencies
	run: pip install -r ${{ github.workspace }}/content-ecosystem-utils/scripts/bioschemas/requirements.txt

	- name: dump bio.tools data in a single bioschemas file
	run: \|
	cd ${{ github.workspace }}/content-ecosystem-utils/scripts/bioschemas
	python bioschemas_dump.py
	mv ${{ github.workspace }}/content-ecosystem-utils/scripts/bioschemas/bioschemas-dump.ttl ${{ github.workspace }}/content/datasets/

	- name: commit new data
	env:
	GITHUB_USER: ${{ secrets.GITHUB_USER }}
	GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
	run: \|
	cd ${{ github.workspace }}/content/
	git config --local user.email "tpe-bot@github.com"
	git config --local user.name "Tools Platform Ecosystem bot"
	git add .
	if git commit -m "build bioschemas RDF dump on $(date)"; then
	git push origin HEAD
	echo "successfully created new data"
	else
	echo "nothing new to add, exiting"
	fi

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