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Argparse will be helpful to make more complex changes to the parsing of command line arguments. This causes breaking changes to the parse.py API but the Makefile is appropriately updated.
I am not sure if this was intended, but logically it seems the "include_pseudo" flag should only include pseudo ops if it is True. The previous behavior was to include pseudo_ops even when the flag was False but the pseudo_op was not already included. Changing the flag to True would then force a pseudo_op to be included even if it was already included.