Skip to content

Wastewater monitoring of SARS-CoV-2 at Schiphol Airport

License

Notifications You must be signed in to change notification settings

rivm-syso/WW_AMS_SC2

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

4 Commits
 
 
 
 
 
 
 
 
 
 
 
 
 
 

Repository files navigation

Wastewater monitoring of SARS-CoV-2 at Schiphol Airport


Publication accepted at Science of the Total Environment


Description

This repository contains the code required to reproduce the plots in the publication: Long-term wastewater monitoring of SARS-CoV-2 viral loads and variants at the major international passenger hub Amsterdam Schiphol Airport: a valuable addition to COVID-19 surveillance.


Usage

The code in this repository has been tested with R 4.2.2. with Tidyverse v2.0.0. Packages required are listed in scripts/supplementary_functions.R. The figures can be produced by running the run_analysis.R script, which automatically sources other scripts and gathers data from online databases and the Zenodo data set associated with the preprint, available under the Creative Commons Attribution 4.0 License.


External data

A list of external data used for plotting is given below.

Automatically sourced

Hospitalization data

To include the hospitalization data in figure 3, please download the weekly hospital admission covid per million data from Our World in Data, and supply the .csv table to the figure_3.R script using the -a option. This data is made available by Our World in Data under the CC BY Licence.


Authorship

Code

Auke Haver & Anne-Merel van der Drift

Manuscript


Funding

This research was funded by the Dutch Ministry of Health, Welfare and Sport as part of the Dutch National Sewage Surveillance program.

About

Wastewater monitoring of SARS-CoV-2 at Schiphol Airport

Resources

License

Stars

Watchers

Forks

Packages

No packages published

Languages