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Note that UniProt accession is used if present
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benmwebb committed Sep 10, 2024
1 parent 8172b86 commit 95043d1
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4 changes: 3 additions & 1 deletion pyext/src/topology/__init__.py
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Expand Up @@ -1372,7 +1372,9 @@ class TopologyReader:
fields split by pipe (|) characters. If so, the FASTA sequence name is
the first field and the second field (if present) is the UniProt
accession. For example, ">cop9|Q13098" yields a FASTA sequence name
of "cop9" and UniProt accession of "Q13098".
of "cop9" and UniProt accession of "Q13098". If such an accession is
present, it is added to the generated structure (and ultimately
recorded in any output RMF file).
- `pdb_fn`: Name of PDB or mmCIF file with coordinates (if available).
If left empty, will set up as BEADS (you can also specify "BEADS")
Can also write "IDEAL_HELIX".
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