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Replace clip_at with breakpoints in clonal_expansion. #129

Replace clip_at with breakpoints in clonal_expansion.

Replace clip_at with breakpoints in clonal_expansion. #129

Workflow file for this run

name: Test tutorials
on:
push:
branches: [main]
pull_request:
branches: [main]
concurrency:
group: ${{ github.workflow }}-${{ github.ref }}
cancel-in-progress: true
jobs:
test:
runs-on: ${{ matrix.os }}
defaults:
run:
shell: bash -e {0} # -e to fail on error
strategy:
fail-fast: false
matrix:
tutorial:
- tutorial_3k_tcr.ipynb
- tutorial_io.ipynb
os:
- ubuntu-latest
python:
- "3.10"
env:
OS: ${{ matrix.os }}
PYTHON: ${{ matrix.python }}
steps:
- uses: actions/checkout@v3
- name: Set up Python ${{ matrix.python }}
uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python }}
cache: "pip"
cache-dependency-path: "**/pyproject.toml"
- name: Install test dependencies
run: |
python -m pip install --upgrade pip wheel
- name: Install dependencies
run: |
pip install ".[doc]"
- name: Test
env:
MPLBACKEND: agg
PLATFORM: ${{ matrix.os }}
DISPLAY: :42
run: |
jupytext -k python3 --execute docs/tutorials/${{ matrix.tutorial }}