Update template to v0.2.22

.cruft.json

@@ -1,7 +1,7 @@
 {
   "template": "https://github.com/scverse/cookiecutter-scverse",
-  "commit": "6a4338030e0c83a9034d607ed66abeff83e18840",
-  "checkout": null,
+  "commit": "605f95714130c960bce12eab98a4e023e8932249",
+  "checkout": "v0.2.22",
   "context": {
     "cookiecutter": {
       "project_name": "scirpy",

.github/workflows/test.yaml

@@ -5,6 +5,8 @@ on:
     branches: [main]
   pull_request:
     branches: [main]
+  schedule:
+    - cron: "0 5 1,15 * *"
 
 concurrency:
   group: ${{ github.workflow }}-${{ github.ref }}

.pre-commit-config.yaml

@@ -40,6 +40,9 @@ repos:
         args: [--fix=lf]
       - id: trailing-whitespace
       - id: check-case-conflict
+      # Check that there are no merge conflicts (could be generated by template sync)
+      - id: check-merge-conflict
+        args: [--assume-in-merge]
   - repo: local
     hooks:
       - id: forbid-to-commit

.pre-commit-config.yaml.rej

@@ -0,0 +1,10 @@
+diff a/.pre-commit-config.yaml b/.pre-commit-config.yaml	(rejected hunks)
+@@ -24,7 +24,7 @@ repos:
+         # See https://github.com/scverse/cookiecutter-scverse/issues/143 and
+         # https://github.com/jupyterlab/jupyterlab/issues/12675
+         language_version: "17.9.1"
+-  - repo: https://github.com/charliermarsh/ruff-pre-commit
++  - repo: https://github.com/astral-sh/ruff-pre-commit
+     rev: v0.0.284
+     hooks:
+       - id: ruff

docs/conf.py

@@ -60,6 +60,7 @@
     "sphinx_autodoc_typehints",
     "sphinx.ext.mathjax",
     "IPython.sphinxext.ipython_console_highlighting",
+    "sphinxext.opengraph",
     *[p.stem for p in (HERE / "extensions").glob("*.py")],
 ]
 

pyproject.toml.rej

@@ -0,0 +1,28 @@
+diff a/pyproject.toml b/pyproject.toml	(rejected hunks)
+@@ -31,11 +31,13 @@ dev = [
+     "twine>=4.0.2"
+ ]
+ doc = [
++    "docutils>=0.8,!=0.18.*,!=0.19.*",
+     "sphinx>=4",
+     "sphinx-book-theme>=1.0.0",
+     "myst-nb",
+     "sphinxcontrib-bibtex>=1.0.0",
+     "sphinx-autodoc-typehints",
++    "sphinxext-opengraph",
+     # For notebooks
+     "ipykernel",
+     "ipython",
+@@ -61,12 +63,10 @@ addopts = [
+
+ [tool.black]
+ line-length = 120
+-target-version = ["py38"]
+
+ [tool.ruff]
+ src = ["src"]
+ line-length = 120
+-target-version = "py38"
+ select = [
+     "F",  # Errors detected by Pyflakes
+     "E",  # Error detected by Pycodestyle