CDR3 aa sequence should be in cdr3_aa, not cdr3

scverse · Jan 9, 2024 · 8e2b464 · 8e2b464
1 parent b9ec986
commit 8e2b464
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/src/scirpy/datasets/__init__.py b/src/scirpy/datasets/__init__.py
@@ -378,7 +378,7 @@ def _get_junction_aa(row, chain="Chain 1"):
         chain1.update(
             {
                 "locus": receptor_dict[row["Chain 1 Type"]],
-                "cdr3": row["Chain 1 CDR3 Curated"],
+                "cdr3_aa": row["Chain 1 CDR3 Curated"],
                 "junction_aa": row["Chain 1 junction_aa"],
                 "junction": None,
                 "consensus_count": None,
@@ -391,7 +391,7 @@ def _get_junction_aa(row, chain="Chain 1"):
         chain2.update(
             {
                 "locus": receptor_dict[row["Chain 2 Type"]],
-                "cdr3": row["Chain 2 CDR3 Curated"],
+                "cdr3_aa": row["Chain 2 CDR3 Curated"],
                 "junction_aa": row["Chain 2 junction_aa"],
                 "junction": None,
                 "consensus_count": None,