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Replace clip_at with breakpoints in clonal_expansion. #439

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merged 12 commits into from
Nov 11, 2023
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@grst grst commented Jul 26, 2023

  • Changelog updated
  • Update tutorial

Close #312.
Close #445

@grst grst marked this pull request as draft July 26, 2023 17:57
@grst grst marked this pull request as ready for review November 11, 2023 18:03
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codecov bot commented Nov 11, 2023

Codecov Report

Attention: 1 lines in your changes are missing coverage. Please review.

Comparison is base (3120a9d) 80.17% compared to head (f534b54) 80.22%.

Additional details and impacted files
@@            Coverage Diff             @@
##             main     #439      +/-   ##
==========================================
+ Coverage   80.17%   80.22%   +0.05%     
==========================================
  Files          49       49              
  Lines        3924     3939      +15     
==========================================
+ Hits         3146     3160      +14     
- Misses        778      779       +1     
Files Coverage Δ
src/scirpy/pl/_clonal_expansion.py 100.00% <100.00%> (ø)
src/scirpy/tl/_clonal_expansion.py 96.07% <95.00%> (-1.22%) ⬇️

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@grst grst merged commit d862cf3 into main Nov 11, 2023
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@grst grst deleted the clonal-expansion branch November 11, 2023 18:23
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ValueError: target_col not found in obs. In tl.clonal_expansion replace clip_at with breakpoints
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