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Fix _has_ir AwkwardArrayView edgecase #564

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merged 1 commit into from
Oct 20, 2024
Merged

Fix _has_ir AwkwardArrayView edgecase #564

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7 changes: 4 additions & 3 deletions src/scirpy/get/__init__.py
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Original file line number Diff line number Diff line change
Expand Up @@ -203,6 +203,7 @@ def airr_context(

def _has_ir(params: DataHandler):
"""Return a mask of all cells that have a valid IR configuration"""
return ak.to_numpy(
(ak.count(params.chain_indices["VJ"], axis=1) + ak.count(params.chain_indices["VDJ"], axis=1)) > 0
)
return (
ak.to_numpy(ak.count(params.chain_indices["VJ"], axis=1))
+ ak.to_numpy(ak.count(params.chain_indices["VDJ"], axis=1))
) > 0
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