chore(module): remove unused code paths in scanvae loss #553
Workflow file for this run
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name: Test (Linux) | |
on: | |
push: | |
branches: [main, 1.1.x, 1.2.x] | |
pull_request: | |
branches: [main, 1.1.x, 1.2.x] | |
concurrency: | |
group: ${{ github.workflow }}-${{ github.ref }} | |
cancel-in-progress: true | |
jobs: | |
test: | |
runs-on: ${{ matrix.os }} | |
defaults: | |
run: | |
shell: bash -e {0} # -e to fail on error | |
strategy: | |
fail-fast: false | |
matrix: | |
os: [ubuntu-latest] | |
python: ["3.9", "3.10", "3.11"] | |
name: Integration | |
env: | |
OS: ${{ matrix.os }} | |
PYTHON: ${{ matrix.python }} | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Set up Python ${{ matrix.python }} | |
uses: actions/setup-python@v5 | |
with: | |
python-version: ${{ matrix.python }} | |
cache: "pip" | |
cache-dependency-path: "**/pyproject.toml" | |
- name: Install dependencies | |
run: | | |
python -m pip install --upgrade pip wheel uv | |
python -m uv pip install --system "scvi-tools[tests] @ ." | |
- name: Test | |
env: | |
MPLBACKEND: agg | |
PLATFORM: ${{ matrix.os }} | |
DISPLAY: :42 | |
run: | | |
coverage run -m pytest -v --color=yes | |
- name: Report coverage | |
run: | | |
coverage report | |
- name: Upload coverage | |
uses: codecov/codecov-action@v4 | |
with: | |
token: ${{ secrets.CODECOV_TOKEN }} |