add warning link to issue

scverse · Apr 3, 2024 · 9cc28ea · 9cc28ea
1 parent 1a4e793
commit 9cc28ea
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Showing 3 changed files with 6 additions and 3 deletions.
diff --git a/scvi/model/_multivi.py b/scvi/model/_multivi.py
@@ -332,7 +332,8 @@ def train(
         if save_best:
             warnings.warn(
                 "`save_best` is deprecated in v1.2 and will be removed in v1.3. Please use "
-                "`enable_checkpointing` instead.",
+                "`enable_checkpointing` instead. See "
+                "https://github.com/scverse/scvi-tools/issues/2568 for more details.",
                 DeprecationWarning,
                 stacklevel=settings.warnings_stacklevel,
             )

diff --git a/scvi/model/_peakvi.py b/scvi/model/_peakvi.py
@@ -240,7 +240,8 @@ def train(
         if save_best:
             warnings.warn(
                 "`save_best` is deprecated in v1.2 and will be removed in v1.3. Please use "
-                "`enable_checkpointing` instead.",
+                "`enable_checkpointing` instead. See "
+                "https://github.com/scverse/scvi-tools/issues/2568 for more details.",
                 DeprecationWarning,
                 stacklevel=settings.warnings_stacklevel,
             )

diff --git a/scvi/train/_callbacks.py b/scvi/train/_callbacks.py
@@ -188,7 +188,8 @@ def __init__(
 
         warnings.warn(
             "`SaveBestState` is deprecated in v1.2 and will be removed in v1.3. Please use "
-            "`SaveCheckpoint` instead.",
+            "`SaveCheckpoint` instead. See https://github.com/scverse/scvi-tools/issues/2568 "
+            "for more details.",
             DeprecationWarning,
             stacklevel=settings.warnings_stacklevel,
         )