Merge pull request #353 from scverse/detached2

Update several tutorials so they will work in scvi-tools 1.2.0, py312…
scverse · Sep 25, 2024 · 6a8a073 · 6a8a073
2 parents 80ddc92 + 7bfc1ce
commit 6a8a073
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Showing 2 changed files with 121 additions and 28 deletions.
diff --git a/spatial/cell2location_lymph_node_spatial_tutorial.ipynb b/spatial/cell2location_lymph_node_spatial_tutorial.ipynb
@@ -997,7 +997,7 @@
     "# (summary of the posterior distribution).\n",
     "adata_ref = mod.export_posterior(\n",
     "    adata_ref,\n",
-    "    sample_kwargs={\"num_samples\": 1000, \"batch_size\": 2500, \"use_gpu\": True},\n",
+    "    sample_kwargs={\"num_samples\": 1000, \"batch_size\": 2500},\n",
     ")\n",
     "\n",
     "# Save model\n",
@@ -1625,7 +1625,7 @@
     "# In this section, we export the estimated cell abundance (summary of the posterior distribution).\n",
     "adata_vis = mod.export_posterior(\n",
     "    adata_vis,\n",
-    "    sample_kwargs={\"num_samples\": 1000, \"batch_size\": mod.adata.n_obs, \"use_gpu\": True},\n",
+    "    sample_kwargs={\"num_samples\": 1000, \"batch_size\": mod.adata.n_obs},\n",
     ")\n",
     "\n",
     "# Save model\n",