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shubham-bioai/README.md

Hi, I'm Shubham Maddhesiya

Bioinformatics · Computational Biology · AI for Healthcare

Biotechnology graduate building research-oriented tools and analytical workflows that bridge biological insight with data science and machine learning — working toward a career in academia as an Assistant Professor.

Portfolio LinkedIn Email ORCID


🎯 Academic Objective

Biotechnology graduate (2025) with hands-on laboratory research and industrial training experience, currently pursuing an M.Sc in Biotechnology. My long-term goal is to build a career in academia as an Assistant Professor — combining research in microbiology and computational biology with a genuine commitment to mentoring the next generation of life science students.


🎓 Education

Degree Duration
M.Sc — Biotechnology Jul 2026 – Aug 2028
B.Sc — Biotechnology Jul 2022 – Aug 2025

🔬 Research Interests

  • Antimicrobial Resistance & Antimicrobial Agents
  • Biotechnology & Fermentation Technology
  • Bioinformatics & Genomic Data Analysis
  • Computational & AI-driven Biology

🛠️ Core Skills

Domain Proficiency
Bioinformatics ████████████████░░░░ 7/10
Dry Lab ████████████████░░░░ 7/10
Wet Lab ██████████████░░░░░░ 6/10
Research Skills ██████████████░░░░░░ 6/10
Python ██████████████░░░░░░ 6/10
Data Analysis (pandas / visualization) ██████████████░░░░░░ 6/10
Machine Learning ████████████░░░░░░░░ 5/10

Actively improving Python & ML skills to build reproducible biological analysis and research tools.


📄 Publications & Presentations

Antimicrobial Activity of Copper on Microorganisms — Undergraduate research project on the antimicrobial mechanism of copper; findings are being prepared for submission as a paper.

M.Sc Research OutputForthcoming Publications and conference presentations arising from ongoing M.Sc research will be added as they are completed.


🧪 Research & Laboratory Experience

Trainee — Antimicrobial Activity of Copper (Project) Mahayogi Gorakhnath University | Jan 2025 – Jun 2025 Investigated the antimicrobial effects of copper on microorganisms as part of undergraduate research training.

Good Laboratory Practices Training Mahayogi Gorakhnath University | Jul 2023 – Aug 2024 Microbial culture techniques, bacterial culturing, analytical and research skills under GLP standards.

Independent Project Work Mahayogi Gorakhnath University | Jun 2023 – Sep 2023 Completed a supervised project on Antibiotic Sensitivity Testing, media preparation, and culturing techniques.

Industrial Internship Trainee India Glycols Limited | Jun 2024 – Jul 2024 Industrial exposure to fermentation processes, ethanol production, distillation units, and quality control operations in a large-scale biofuel and biotechnology production environment.


🔭 Projects & Research Highlights

🧠 AMR KnowledgeBase — Flagship Project

A structured knowledgebase and analytical framework for studying antimicrobial resistance genes and genomic patterns across pathogens. Includes data collection, NCBI sequence processing, BLAST automation, visualization, and prototype pipeline creation.

🚧 In active development

Other Projects


🎓 Teaching & Mentoring

Mentoring 50+ undergraduate students in Biotechnology through one-on-one guidance and an active LinkedIn presence, helping them navigate coursework, research directions, and career choices in the life sciences. Recognized as one of the most active voices in my network, with 1,000+ LinkedIn followers.


🧰 Technical & Laboratory Skills

  • Microbial Culturing, Media Preparation & Aseptic Techniques
  • Kirby–Bauer Antibiotic Sensitivity Testing & Zone of Inhibition Analysis
  • Bacterial & Fungal Identification
  • Fermentation Technology & Ethanol Production Process
  • Good Laboratory Practices (GLP), Biosafety & Waste Management
  • Laboratory Documentation, Equipment Handling & Calibration
  • Basic Bioinformatics (Python)

💻 Tools & Technologies

Bioinformatics & Genomics

BLAST Biopython FASTA

Data Analysis

pandas matplotlib seaborn

Version Control

Git GitHub

Future Focus

Machine Learning


🏅 Certifications & Training

  • Molecular Docking Workshop — Discovery Boulevard (Aug 2025)
  • Data Analytics Job Simulation — Deloitte / Forage (Apr 2025)
  • Molecule to Market Job Simulation — Pfizer / Forage (Apr 2025)
  • HTML Language — Infosys Springboard (Dec 2024)
  • Certified Biotech Sector Financial Modeling — Infosys Springboard (Nov 2024)
  • Industrial Internship Certificate — India Glycols Limited (Jul 2024)
  • Personality Development Skill — SGBS Unatti Foundation (Jan 2024)
  • Environmental Sciences Internship — Internshala (Dec 2023)

🏆 Awards & Scholarships

To be updated as academic honors and scholarships are earned during my M.Sc and beyond.


📊 GitHub Stats

Shubham's GitHub Stats Top Languages


🤝 Connect with Me

I'm open to research collaborations, internships, and academic opportunities — especially in computational biology and AI-driven bioinformatics.

Portfolio LinkedIn Email ORCID

References available upon request.

Profile Views

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  1. Antimicrobial-Activity-on-Copper-Study Antimicrobial-Activity-on-Copper-Study Public

    Antimicrobial Activity on Copper Study & Lab Work

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  2. shubham-maddhesiya-portfolio shubham-maddhesiya-portfolio Public

    Shubham Digital Portfolio, Live link given below 👇

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  3. bone-fracture-detection-app bone-fracture-detection-app Public

    An AI-powered bone fracture detection system that analyzes X-ray images, predicts fracture presence with confidence scores, generates downloadable medical-style PDF reports, and delivers a clean, p…

    Jupyter Notebook