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Bash scripts directly usable on UNIT-769/770 @ Bioinformatics Institute

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My_functions.R
My_functions.R
 
 
My_functions_chpc.R
My_functions_chpc.R
 
 
README.md
README.md
 
 
SRR_to_names.sh
SRR_to_names.sh
 
 
bowtie2_align.sh
bowtie2_align.sh
 
 
bwa_build.sh
bwa_build.sh
 
 
bwt2_build.sh
bwt2_build.sh
 
 
bwt_build.sh
bwt_build.sh
 
 
cat_archives.sh
cat_archives.sh
 
 
convert_gmt.pl
convert_gmt.pl
 
 
dump.sh
dump.sh
 
 
dumpraw.sh
dumpraw.sh
 
 
get_ENCODE.sh
get_ENCODE.sh
 
 
get_GSM.sh
get_GSM.sh
 
 
get_dis.sh
get_dis.sh
 
 
hss2mg.pl
hss2mg.pl
 
 
htseq.sh
htseq.sh
 
 
htseq2table.sh
htseq2table.sh
 
 
kallisto_quant.sh
kallisto_quant.sh
 
 
make_chromhmm_input.sh
make_chromhmm_input.sh
 
 
make_chromhmm_table.sh
make_chromhmm_table.sh
 
 
make_hist.py
make_hist.py
 
 
make_ribo_intervals.sh
make_ribo_intervals.sh
 
 
make_rrna_intervals.sh
make_rrna_intervals.sh
 
 
make_svg.R
make_svg.R
 
 
make_tdf.sh
make_tdf.sh
 
 
mv_gsm_all.py
mv_gsm_all.py
 
 
mv_srr_all.py
mv_srr_all.py
 
 
overlap.pl
overlap.pl
 
 
pathways_to_gmt.pl
pathways_to_gmt.pl
 
 
preprocess_ncbi_gene.sh
preprocess_ncbi_gene.sh
 
 
rmdup.pl
rmdup.pl
 
 
rsem2table.sh
rsem2table.sh
 
 
rsem_quant.sh
rsem_quant.sh
 
 
run_bamtobed.sh
run_bamtobed.sh
 
 
run_bowtie.sh
run_bowtie.sh
 
 
run_bowtie2.sh
run_bowtie2.sh
 
 
run_chromhmm.sh
run_chromhmm.sh
 
 
run_dis.sh
run_dis.sh
 
 
run_kallisto.sh
run_kallisto.sh
 
 
run_macs.sh
run_macs.sh
 
 
run_rsem.sh
run_rsem.sh
 
 
run_sicer.sh
run_sicer.sh
 
 
run_star.sh
run_star.sh
 
 
sicer_bg.sh
sicer_bg.sh
 
 
sicer_nobg.sh
sicer_nobg.sh
 
 
split_dump.sh
split_dump.sh
 
 
split_gz.sh
split_gz.sh
 
 
star_align.sh
star_align.sh
 
 
star_mkindex.sh
star_mkindex.sh
 
 
star_stat_genprime_v23.sh
star_stat_genprime_v23.sh
 
 
star_torrent.sh
star_torrent.sh
 
 
unify_exons.sh
unify_exons.sh
 
 
wget_files.sh
wget_files.sh
 
 

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ws_scripts

Bash scripts directly usable on UNIT-769/770 @ Bioinformatics Institute

Officer Turdly to the rescue.

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Bash scripts directly usable on UNIT-769/770 @ Bioinformatics Institute

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