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Updated the workflows in running the notebooks
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JacobTh98 committed Oct 25, 2023
1 parent de00817 commit 216a286
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2 changes: 1 addition & 1 deletion .github/workflows/lint_nb.yml
Original file line number Diff line number Diff line change
Expand Up @@ -3,7 +3,7 @@ name: Linting Notebooks with Black
on:
push:
branches:
- ci # Change this to your repository's main branch
- ci # Change this to the repository's main branch
pull_request:
branches:
- ci
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61 changes: 61 additions & 0 deletions .github/workflows/run_nb.yml
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name: Run Notebooks

on:
push:
branches:
- dev # Change this to the repository's main branch
pull_request:
branches:
- dev
schedule:
- cron: "0 0 * * 0" # Run every Sunday at midnight UTC (4 week interval)

jobs:
build:
runs-on: ubuntu-latest
strategy:
matrix:
python-version: ["3.12"]

steps:
- name: Checkout code
uses: actions/checkout@v4

- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python-version }}

# Testing matrix by printing the current Python version:
- name: Display Python version
run: python -c "import sys; print(sys.version)"

- name: Install dependencies
run: pip install jupyter nbconvert
- run: pip install -r requirements.txt
- run: pip install -r ci/requirements.txt

- name: Find notebooks
id: find-notebooks
run: |
find . -name "*.ipynb" > notebooks.txt
cat notebooks.txt
shell: bash

- name: Execute notebooks
run: |
cat notebooks.txt | while read -r notebook; do
jupyter nbconvert --to notebook --execute --inplace "$notebook"
done
continue-on-error: true # Set to false for PullRequest
shell: bash

- name: Check for errors
run: |
if grep "raise Exception(" *.ipynb; then
echo "Error found in notebook(s)."
exit 1
else
echo "No errors found in notebooks."
fi
shell: bash

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