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Statens Serum Institut

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  1. CD-MRG-metabolomics_summerschool_2023 CD-MRG-metabolomics_summerschool_2023 Public

    This repository contains teaching material for the 3rd International Summer School on Non-Targeted Metabolomics Data Mining for Biomedical Research

    Jupyter Notebook 12 13

  2. serum_readfilter serum_readfilter Public

    Python 7

  3. bifrost bifrost Public

    6 6

  4. SCDB SCDB Public

    R package for maintaining data bases with slowly-changing-dimensions

    R 6 2

  5. miniLIMS miniLIMS Public

    LIMS in development to be used in NGS facility

    Python 5

  6. GenEpi-BioTrain_Virtual_Training_7 GenEpi-BioTrain_Virtual_Training_7 Public

    All data used in the GenEpi-BioTrain Virtual Training 7 session on march 19-20, 2024

    Python 5

Repositories

Showing 10 of 109 repositories
  • aedseo Public

    Automated and Early Detection of Seasonal Epidemic Onset

    ssi-dk/aedseo’s past year of commit activity
    R 1 0 5 1 Updated Nov 1, 2024
  • ecoli_fbi Public

    Determines the serotype and virulence in Escherichia coli isolates using NGS data (reads) through kmer alignment.

    ssi-dk/ecoli_fbi’s past year of commit activity
    Python 0 0 0 0 Updated Nov 1, 2024
  • bifrost_sp_ecoli Public

    Ecoli related analysis for the SOFI platform.

    ssi-dk/bifrost_sp_ecoli’s past year of commit activity
    Python 0 0 0 0 Updated Nov 1, 2024
  • cdiff_fbi Public

    Typing of Clostridioides difficile isolates using NGS data (reads and contigs) based on tandem repeat loci (TR6, TR10), and toxin genes (cdtA, cdtB, tcdA, tcdB, tcdC).

    ssi-dk/cdiff_fbi’s past year of commit activity
    ASP.NET 0 MIT 0 0 0 Updated Nov 1, 2024
  • bio_api Public

    REST API for triggering bioinformatic calculations from SOFI

    ssi-dk/bio_api’s past year of commit activity
    Python 0 0 0 4 Updated Nov 1, 2024
  • sofi_core_gitops Public

    GitOps configuration for the sofi_core Kubernetes cluster

    ssi-dk/sofi_core_gitops’s past year of commit activity
    0 2 0 0 Updated Nov 1, 2024
  • sofi_core Public
    ssi-dk/sofi_core’s past year of commit activity
    Python 1 0 4 28 Updated Nov 1, 2024
  • diseasystore Public

    R package that provides a feature store tailored towards disease modelling

    ssi-dk/diseasystore’s past year of commit activity
    R 2 GPL-3.0 1 4 2 Updated Oct 30, 2024
  • bifrost_chewbbaca Public
    ssi-dk/bifrost_chewbbaca’s past year of commit activity
    Python 1 MIT 1 0 0 Updated Oct 30, 2024
  • AEF-DDF Public
    ssi-dk/AEF-DDF’s past year of commit activity
    R 1 0 0 1 Updated Oct 29, 2024
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