bump #139

	name: Tests (install w/ pip)

	on:
	push:
	branches: [ master ]
	pull_request:
	branches: [ master ]

	jobs:

	build:

	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v2
	- name: Setup Python 3.7
	uses: actions/setup-python@v2
	with:
	python-version: 3.7
	- name: Add conda to system path
	run: \|
	# $CONDA is an environment variable pointing to the root of the miniconda directory
	echo $CONDA/bin >> $GITHUB_PATH
	- name: Debug info
	run: \|
	echo "Running pwd..."
	pwd
	echo "\nRunning echo $USER..."
	echo $USER
	echo "\nRunning chown..."
	sudo chown -R -H -L $USER:$USER /home/runner/work/salmon/
	chown -R -H -L $USER:$USER /home/runner/work/salmon/
	echo "\nRunning chmod..."
	sudo chmod -R 777 /home/runner/work/salmon/
	echo "\nRunning `ls`..."
	ls
	- name: Prepare for docker build...
	run: \|
	chmod +x launch.sh
	# chown -R -H -L $USER:$USER .
	sudo chown -R -H -L $USER:$USER .
	sudo chown -R -H -L $USER:$USER salmon docs tests
	- name: Install dependencies
	run: \|
	pip install ".[server,dev]"
	- name: Run tests in salmon/salmon/
	run: sudo /usr/share/miniconda/bin/pytest salmon/
	- uses: docker/setup-buildx-action@v1
	with:
	driver: docker
	- name: Build Salmon server w/ Docker
	env:
	SALMON_NO_AUTH: 1
	run: \|
	sudo --preserve-env=SALMON_NO_AUTH docker-compose up &
	until curl 127.0.0.1:8421 > /dev/null 2>&1; do :; done # wait for container to start
	sudo docker ps
	- name: Run all tests
	run: \|
	# sudo docker-compose logs -f & # if debugging; shows logs
	# sudo /usr/share/miniconda/bin/pytest -s
	sudo /usr/share/miniconda/bin/pytest

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