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tchen-tt · Jul 30, 2024 · f782777 · f782777
1 parent c96affa
commit f782777
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Showing 4 changed files with 10 additions and 1 deletion.
diff --git a/.DS_Store b/.DS_Store
diff --git a/.Rbuildignore b/.Rbuildignore
@@ -0,0 +1,2 @@
+^.*\.Rproj$
+^\.Rproj\.user$
diff --git a/.gitignore b/.gitignore
@@ -0,0 +1,7 @@
+.Rproj.user
+.Rhistory
+.RData
+.Ruserdata
+src/*.o
+src/*.so
+src/*.dll
diff --git a/src/teseq.cpp b/src/teseq.cpp
@@ -267,7 +267,7 @@ void processSequence1(bam1_t *b, bam_hdr_t *hdr, FILE *f, int length, int tsd) {
           continue;
         }
       } 
-      else if (i == c->n_cigar){
+      else if (i == c->n_cigar - 1){
         if (bam_cigar_op(cigar[i-1]) == 0) {
           type = 2; //MS
         } else {