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Change order of the export of PERL5LIB to avoid _strip_crnl
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tderrien authored Feb 6, 2018
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4 changes: 2 additions & 2 deletions README.md
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Expand Up @@ -62,7 +62,7 @@ Basically, FEELnc users should have the following minimal input files:
The following software and libraries must be installed on your machine:

- [Perl5+](https://www.perl.org/) : tested with version 5.18.2
* [Bioperl](http://www.bioperl.org/wiki/Main_Page) : tested with version BioPerl-1.6.924;
* [Bioperl](http://www.bioperl.org/wiki/Main_Page) : tested with version BioPerl-1.6.924 (partial tests with BioPerl >=1.7);
* [Paralell::ForkManager](http://search.cpan.org/perldoc/Parallel::ForkManager) : tested with version 1.07.

- R [Rscript](http://cran.r-project.org): tested with version 3.1.0.
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Export PERL5LIB and FEELNCPATH variables

export FEELNCPATH=${PWD}
export PERL5LIB=${FEELNCPATH}/lib/:$PERL5LIB
export PERL5LIB=$PERL5LIB:${FEELNCPATH}/lib/ #order is important to avoid &Bio::DB::IndexedBase::_strip_crnl error with bioperl >=v1.7

export PATH=$PATH:${FEELNCPATH}/scripts/
export PATH=$PATH:${FEELNCPATH}/utils/
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