🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes
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Oct 1, 2024 - Python
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bacteriophages
Here are 8 public repositories matching this topic...
Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes
clustering
viruses
taxonomic-classification
dereplication
average-nucleotide-identity
sequence-similarity
genome-sequence
bacteriophages
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Oct 22, 2024 - Python
A curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.
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Jul 12, 2022
A reconfigurable machine learning pipeline for labeling ORFs/proteins in bacteriophage genomes and metagenomic data.
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Aug 17, 2024 - Jupyter Notebook
A proof-of-concept, automated and reproducible pipeline for predicting functional associations between pVOGs.
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Nov 3, 2021 - Python
The PhageBox is a digital microfluidics device that integrates temperature and magnetic control modules at the hardware level. This repository contains the embedded software which contains a finite state machine for representing PCR and a graphical user interface for visual feedback and operation.
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Apr 7, 2023 - C++
Fast and accurate tool for calculating Average Nucleotide Identity (ANI) among virus and bacteria genomes
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Oct 22, 2024 - C++
PhageFilter uses a Sequence Bloom Tree (SBT) to filter bacteriophage reads from metagenomic files.
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Dec 10, 2023 - Rust
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