cfDNApipe: A comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data
-
Updated
Aug 18, 2022 - Python
#
cfdna
Here are 51 public repositories matching this topic...
R package to work with ctDNA sequencing data
genomics cancer ngs sequencing mutations ctdna cfdna liquid-biopsy cell-free-dna mrd circulating-tumor-dna
-
Updated
Feb 20, 2022 - R
FinaleToolkit is a package and standalone program to extract fragmentation features of cell-free DNA from paired-end sequencing data.
bioinformatics genomics computational-biology cfdna epigenomics cell-free-dna bioinformatics-tool fragmentomics genomics-analysis
-
Updated
Aug 10, 2026 - Python
This is the official development repository for BaseVar, which call variants for large-scale ultra low-pass (<1.0x) WGS data, especially for NIPT data
-
Updated
May 28, 2026 - C++
High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants
-
Updated
Mar 27, 2020 - R
Important papers relating to the biology of cell free DNA
-
Updated
Sep 21, 2018
LIONHEART detects cancer from whole genome sequenced plasma cell-free DNA.
cancer-genomics whole-genome-sequencing cfdna cancer-detection cell-free-dna chromatin-accessibiity fragmentomics
-
Updated
Aug 2, 2026 - Python
This is the official development repository for BaseVar, which call variants for large-scale ultra low-depth(<1.0x) WGS data, especially for NIPT data and ancient DNA
bioinformatics variant-calling cfdna low-coverage-sequencing nipt basevar non-invasive-prenatal-test
-
Updated
Sep 1, 2026 - C++
R package and vignette to denoise metagenomic cell-free DNA sequencing data.
-
Updated
Nov 5, 2019 - Roff
Ultra-fast command line tools for extracting bias-corrected fragmentation patterns from cell-free DNA
bioinformatics cancer-research whole-genome-sequencing cfdna cancer-detection cell-free-dna circulating-tumor-dna fragmentomics cfdna-profiling
-
Updated
Aug 12, 2026 - Rust
As a tool for cancer subtype prediction, Keraon uses features derived from cell-free DNA (cfDNA) in conjunction with PDX reference models to perform both classification and heterogenous phenotype fraction estimation.
bioinformatics feature-selection classification wgs ctdna deconvolution whole-genome-sequencing cfdna cell-free-dna fractional-phenotype-estimation
-
Updated
Mar 4, 2026 - Python
cfDNA methylation probe design from mybaits targeted sequencing
-
Updated
Jul 13, 2018 - Python
A flexible and sensitive method for capturing and integrating multimodal epigenetic information from cell-free DNA (cfDNA) using a single experimental assay.
python machine-learning bioinformatics pypi sequencing dna methylation epigenetics ensemble-learning wgbs cfdna fragmentation multimodal nucleosome em-seq stacking-ensemble computional-biology
-
Updated
Aug 6, 2026 - Jupyter Notebook
Self-learning cfDNA fragmentation analysis
-
Updated
Aug 5, 2026 - R
This repository serves as a dedicated space for housing the codebase used in our publication for cfGWAS reveal genetic basis of cell-free DNA features. It is intended to provide researchers with access to the methodologies and algorithms employed in our study, facilitating further research and analysis in the field of genetic.
-
Updated
Nov 7, 2024 - R
Cancer estimation based on nucleosomes: Analysis of proportion of circulating tumor DNA fragments compared to nucleosome references.
-
Updated
Dec 2, 2019 - C
Add this topic to your repo
To associate your repository with the cfdna topic, visit your repo's landing page and select "manage topics."