#

clip-seq

Here are 12 public repositories matching this topic...

Xinglab / CLAM

CLIP-seq Analysis of Multi-mapped reads

expectation-maximization peak-caller iclip peak clip-seq rip-seq eclip

Updated Jul 20, 2021
Python

nf-core / clipseq

CLIP sequencing analysis pipeline for QC, pre-mapping, genome mapping, UMI deduplication, and multiple peak-calling options.

workflow pipeline nextflow clip clip-seq nf-core peak-calling rna-rbp-interactions

Updated Jul 28, 2026
Nextflow

slebedeva / CLIP_mapping

a pipeline to map CLIP-seq data

next-generation-sequencing clip-seq

Updated Mar 3, 2020
Python

simras / CLAP

CLAP - A pipeline used to process CLIP-seq (specifically PAR-CLIP, HITS-CLIP and iCLIP) data.

bioinformatics-pipeline iclip par-clip ngstools hits-clip clip-seq

Updated Jun 2, 2017
Perl

fchen365 / surf

The statistical utility for RBP functions (SURF)

package rna-seq surf alternative-splicing integrative-analysis clip-seq differential-analysis

Updated Jun 14, 2021
R

y9c / PIPE-CLIP

Optimized version of PIPE-CLIP tool (bug fixed)

rna clip-seq rip-seq

Updated May 6, 2022
Python

SoniaRuiz / RBP_RNA_interactions

Shiny App for the visualisation of RBP-RNA interactions supported by the binding sites of RBPs derived from CLIP-seq data (ENCORI database).

clip-seq ggplot rbp shinyapp rbp-rna

Updated Mar 15, 2024
R

biterbilen / PhD_UniBas_ZavolanLab_dataAnalysisManagement

Reproducable RNA-biology analysis pipelines, from phd research

bash bioinformatics rna-seq pipeline data-engineering clip-seq reproducable-research

Updated Jul 22, 2026
Shell

ShangZhang / clipipe

CLIPipe(CLIP-seq Pipeline) is an integrated pipeline for analyzing CLIP sequencing data.

high-throughput-sequencing clip-seq

Updated Dec 3, 2021
HTML

EMBL-Hentze-group / CLIPseq-workflow

Workflow for processing CLIP-seq data

bioinformatics nextflow clip-seq ngs-pipeline

Updated Jul 16, 2026
Nextflow

SpaceSorcerer / RBP-RELI

RBP-RELI: hg38 permutation-based CLIP-peak overlap enrichment engine for alternative-splicing events (Numba CPU reference backend). Public snapshot from v1.1.0.

bioinformatics alternative-splicing clip-seq permutation-test hg38 rna-binding-protein

Updated Aug 23, 2026
Python

BackofenLab / CLIPcontext

Extract CLIP-seq binding regions with both genomic and transcript context

clip-seq

Updated Jul 30, 2021
Python

Add this topic to your repo

To associate your repository with the clip-seq topic, visit your repo's landing page and select "manage topics."