Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]
-
Updated
Mar 6, 2024 - C++
Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]
A Julia package for handle genome graph in the GFA format.
Linear-time, low-memory construction of variation graphs
A repository for scoring gliding competitions, that aims to be efficient and accurate.
A Go library for working with Graphical Fragment Assembly format
Genome parser and visualisation
Web-app that handles submitting scan-requests to the Annex.
Line-by-line converter from GFA to RDF (turtle)
SPARQL endpoint to represent pangenomic data
generating hardware accelerators for pangenomic graph queries
RDF and SPARQL ideas to build on top of [odgi](https://github.com/pangenome/odgi)
Panacus is a tool for computing statistics for GFA-formatted pangenome graphs
GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
Gfapy: a flexible and extensible software library for handling sequence graphs in Python
Python library for converting PDF and images to and from Zebra Programming Language (ZPL).
Add a description, image, and links to the gfa topic page so that developers can more easily learn about it.
To associate your repository with the gfa topic, visit your repo's landing page and select "manage topics."