tools for working with genome variation graphs
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Updated
Oct 10, 2024 - C++
tools for working with genome variation graphs
Modular Multi-scale Integrated Genome Graph Browser
Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions
An accurate aligner of long reads to a variation graph, based on co-linear chaining
A web-based, interactive pangenome visualization tool
Linear-time, low-memory construction of variation graphs
Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]
SV genotyper for long reads with a variation graph
A Go library for working with Graphical Fragment Assembly format
Handlegraph RDF writers in java for working with variation graph genome data.
Library to parse, edit and handle in memory GFA graphs
Analysis of shared parts of a pangenome
This is experiment to measure performance in vg recalibrate, testing different models.
RUST port of pancat compare tool
Notes upon pangenome graphs construction
A tool for modelling graphs of genetic variation.
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