Repository containing lists of all published ancient metagenomic (and related) samples and libraries

Jacobs Lab UCLA : Preprocess shotgun metagenomics data on the UCLA supercomputer

Snakemake based framework for NGS data analysis and management

En este repositorio se presenta un código de R para poder hacer un análisis de datos Metagenómicos a partir de datos arrojados por un análisis taxonómico del programa KRAKEN 2

🌊 Robust workflows for gathering data about your local ocean.

Host plant rhizosphere microbiome analysis

Building a pipeline for automated 16S analysis from paired short-reads or long-reads

National workshop on microbiome informatics

metegnome sequence extractions from MAGs

pangenome metagenomics normlization for specific ids

bash based metagenomics otu plotter before analysis

This is a python package for analysis of metagenomics data.

An automated pipeline for metagenomic assembly and gene annotation

A simplified version of Kraken, ideal for learning metagenomic analysis. Explore taxonomic classification of DNA sequences and gain insights into microbial communities with this user-friendly educational tool. Perfect for beginners seeking to understand the fundamentals of metagenomics.

analyzing bacterial genome based ontologies and phylogenomics informativeness

An open-source R package containing decontamination pipelines for low-biomass microbiome data

bacterial mategnomes assembly and pangenomes

This repository provides the scripts used to analyze the metagenomics data from the paper Nicotinamide Riboside-Conditioned Microbiota Deflects High-Fat Diet-Induced Weight Gain in Mice.

This repository contains code for generating an interactive sunburst graphic for metagenomic analysis.