Using RNA-Seq data to improve microRNA target prediction accuracy in animals

CRAFT is a computational pipeline that predicts circRNA sequence and molecular interactions with miRNAs and RBPs, along with their coding potential. CRAFT provides a comprehensive graphical visualization of the results, links to several knowledge databases, extensive functional enrichment analysis and combination of predictions for different cir…

An open platform which provides information about miRNAs and genes from different popular databases

Source code for miRiam web server and visualisation

SFold RNA tools

The TRMRNASeqTools is a SHELL and Python based pipeline designed for automatic general analysis for TRM sRNA sequencing data in supported plants.

multiMiR package in R, providing gene-miRNA-lncRNA interactions for ceRNA network construction

Web application for accessing data generated by FilTar

Code for the master thesis "Exploring MicroRNA Interaction Networks to Explain the Relationship Between Caloric Restriction and Breast Cancer in Mice"

An open-source R package to comprehensively explore the role of impaired miRNA regulatory networks in complex biological conditions.

miRNA target identification in non-model species

Investigate the role of mtDNA in the sex determination of freshwater mussels with doubly uniparental mitochondrial inheritance. Scripts for DESeq2, WGCNA, GSEA, AlphaFold/AlphaPulldown, and mt-sncRNA validation.

Database of pairwise consensuses for miR-mRNA target interactions