Nextflow pipeline to assemble genomes from long reads.

Meiotic Recombination Detection Pipeline with PacBio HiFi sequencing reads

Adapter+Barcode trimming from Pacbio HiFi reads

pacbiohifi view using awk

Variant calling pipeline for Pacbio Hifi reads

trimmomatic for long reads

go driven pacbiohifi sam sort for browser requests and caching

pacbiohifi read analyzer using recursion

awk utilites for anlyzing pacbiohifi genomes and reads

profiling pacbiokmers and filtering pacbio kmers

multipattern trimmomatic for long reads

kmer profile for pacbiohifi reads in julia language

extracting specific motifs from pacbio and oxford nanopore long reads.

pacbio/oxford nanopore long reads repeat coverage estimation

streaming visualization of pacbiohifi reads

polyATGC pacbio/oxford nanopore estimator

codegetter for illumina, pacbio and oxford long read and short reads

Scripts for de-novo genome assembly, assembly polishing, QC and post-assemble analyses of HiFi whole genome sequence data and downstream pangenomics analyses to identify structural variants

a streamlit application for graphical analyisis of pacbiohifi reads