Pstrain profiles strains in metagenomics data. It infers strain abundance and genotype for each species. Also, it has a single species mode; where given a BAM and VCF, it can phase the variants for any species.
snp
phase
strain
marker-gene-analysis
metagenomics-toolkit
profile-strains
metaphlan3
metagenotyping
genotype-frequency
microbial-strain
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Updated
May 16, 2024 - Shell