iCount, protein-RNA interaction analytics
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Updated
Dec 14, 2021 - Python
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protein-rna-interactions
Here are 10 public repositories matching this topic...
pLM-informed E(3) equivariant deep graph neural networks for protein-nucleic acid binding site prediction
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Apr 24, 2024 - Python
Single-sequence protein-RNA complex structure prediction with biological language models
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Aug 23, 2024 - Python
R package for the RNA Centric Annotation System (RCAS)
go
reporting
bioconductor
rna
interactive-plots
msigdb
modification
protein-rna-interactions
par-clip
motif-discovery
coverage-distribution
cage
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Updated
Feb 4, 2024 - R
A tool for predicting lncRNA-protein interaction probability from sequences.
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Updated
Apr 23, 2019 - Jupyter Notebook
Official Pytorch implementation of CrossBind: Collaborative Cross-Modal Identification of Protein Nucleic-Acid-Binding Residues.
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May 10, 2024 - Python
An improved method for predicting RNA-interacting residues in a protein
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Dec 22, 2022 - Python
Plot position weight matrices (PWM)
dna
rna
pwm
protein-rna-interactions
binding-sites
motifs
protein-dna-interactions
rna-binding-proteins
tfbs
position-weight-matrix
transcription-factor-binding-sites
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Updated
Aug 28, 2024 - Julia
Prediction of surface protein expression from mRNA expression using a regression auto-encoder neural network.
torch
pytorch
autoencoder
protein-rna-interactions
mrna
fine-tuning
single-cell-analysis
cite-seq
autoencoder-neural-network
protein-expression
regression-model
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Updated
Mar 3, 2024 - Python
Plot position weight matrices (PWM)
dna
rna
protein-rna-interactions
binding-sites
motifs
protein-dna-interactions
rna-binding-proteins
tfbs
transcription-factor-binding-site
position-weight-matrix
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Updated
Oct 9, 2024 - Julia
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