Database of pairwise consensuses for miR-mRNA target interactions

MD thesis' project, where I performed an In silico target prediction for small ncRNAs in Mycobacterium tuberculosis

This repository contains our path generation framework Co-NNECT, in which we combine two models for establishing knowledge relations and paths between concepts from sentences, as a form of explicitation of implicit knowledge: COREC-LM (COmmonsense knowledge RElation Classification using Language Models), a relation classification system that we …

De novo target prediction by chemical similarity-guided network-based inference

This repository contains our path generation framework Co-NNECT, in which we combine two models for establishing knowledge relations and paths between concepts from sentences, as a form of explicitation of implicit knowledge: COREC-LM (COmmonsense knowledge RElation Classification using Language Models), a relation classification system that we …

PIDGINv4

LigTMap currently supports prediction for 17 protein target classes that include 6000+ protein targets.

Code to accompany the "Implications of Topological Imbalance for Representation Learning on Biomedical Knowledge Graphs" (Briefings in Bioinformatics, 2022)

PIDGIN Version 2: Prediction IncluDinG INactivity: Version 2 (LEGACY VERSION)

[CVPR 2022] Egocentric Action Target Prediction in 3D

Code to accompany the "Understanding the Performance of Knowledge Graph Embeddings in Drug Discovery" manuscript (Artificial Intelligence in the Life Sciences, 2022)

Protein target prediction using random forests and reliability-density neighbourhood analysis