Protein target prediction using random forests and reliability-density neighbourhood analysis

LigTMap currently supports prediction for 17 protein target classes that include 6000+ protein targets.

PIDGIN Version 2: Prediction IncluDinG INactivity: Version 2 (LEGACY VERSION)

Code to accompany the "Understanding the Performance of Knowledge Graph Embeddings in Drug Discovery" manuscript (Artificial Intelligence in the Life Sciences, 2022)

PIDGINv4

This repository contains our path generation framework Co-NNECT, in which we combine two models for establishing knowledge relations and paths between concepts from sentences, as a form of explicitation of implicit knowledge: COREC-LM (COmmonsense knowledge RElation Classification using Language Models), a relation classification system that we …

[CVPR 2022] Egocentric Action Target Prediction in 3D

This repository contains our path generation framework Co-NNECT, in which we combine two models for establishing knowledge relations and paths between concepts from sentences, as a form of explicitation of implicit knowledge: COREC-LM (COmmonsense knowledge RElation Classification using Language Models), a relation classification system that we …

Database of pairwise consensuses for miR-mRNA target interactions

Code to accompany the "Implications of Topological Imbalance for Representation Learning on Biomedical Knowledge Graphs" (Briefings in Bioinformatics, 2022)

De novo target prediction by chemical similarity-guided network-based inference

MD thesis' project, where I performed an In silico target prediction for small ncRNAs in Mycobacterium tuberculosis