A 'megaplot' is a 'shiny' application and as the name suggests, is a huge graphical display showing individual-level data over time interactively.
🌈 chromhandler is a Python package designed to streamline the processing and analysis of chromatographic data, enabling efficient metadata enrichment and conversion to EnzymeML format for further analysis.
Differential accessibility, LRT tests and timecourse analyses for chromatin accessibility data
Method for aligning biological replicate data
Method for aligning biological replicate data
A python package to integrate expression data into copasi models. It uses functionalities of python-copasi.
A collection of trans-omic datasets
My Spring 2024 term project for NYU's Applied Genomics graduate course (M.S. Biology). Using data from Brar et al, analysis of average gene expression on certain regions of baker's yeast chromosomes during traditional time course meiosis.
Fitting time-course metabolomics onto genome-scale metabolic models for inferring metabolic activity.
Topology-based analysis and querying of short longitudinal multi-omics trajectories using Omics Trajectory Signatures (OTS)
A complete R analysis pipeline for MD Anderson RPPA Core output
RNA-seq time course analysis pipeline: DESeq2 → GSEA → Pathview → interactive HTML report
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