Data and code to support Barnard et al., Modelling the medium-term dynamics of SARS-CoV-2 transmission in England in the Omicron era, Nature Communications (2022).
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Updated
Aug 31, 2022 - R
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variants-of-concern
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This repository contains a script for analyzing SARS-CoV-2 evolution in epitopes during the first two waves of the COVID-19 pandemic. The immunological data come from a high protein density array analysis of SARS-CoV-2 epitopes in 15 patients (N'Guessan A. et al., 2022). This script and the related data can be updated manually to integrate data …
evolution
transmission
delta
selection
immunology
omicron
within-host
sars-cov-2
immune-escape
variants-of-interest
variants-of-concern
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Updated
Feb 15, 2022 - R
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