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Update various flake inputs and the flake.lock file. Adapt the flake.nix file, as well as the Rust source code, to accomodate the latest changes (new clippy warnings, etc.). Topiary is getting hard to use from the flake, because there are two conflicting versions: the one that is pulled from Nix to be used in the CI (checking that files are properly formatted), and the one built into Nickel via cargo. Both must agree (or at least there might be a difference in formatting between the two if they aren't the same version). Since the addition of dynamic loading of grammars, latest Topiary has become harder to build from Nix. To avoid all those pitfalls, this commit gets rid of the Topiary as a flake input, and use `nickel format` instead, ensuring that the formatting is consistent. As a consequence, Topiary isn't included in the development shell anymore, but it's arguably not an issue: it was included before `nickel format`, as we needed a third party formatter, but now one can just build Nickel locally with their preferred method and use `nickel format`.
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