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add extra file size rule for bwa_mem2
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100G RAM for jobs with 1-2GB input
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cat-bro authored Aug 29, 2024
1 parent 3a03bf7 commit a427a52
Showing 1 changed file with 5 additions and 1 deletion.
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Expand Up @@ -1350,9 +1350,13 @@ tools:
- pulsar
rules:
- id: bwa_mem2_small_input_rule
if: input_size < 2
if: input_size < 1
cores: 8
mem: 30.7
- id: bwa_mem2_medium_input_rule
if: 1 <= input_size < 2
cores: 8
mem: 100
- id: bwa_mem2_fail_rule
if: input_size > 150
fail: "Too much data: There is a limit of 150GB of input for bwa_mem2 jobs. Please note that bwa_mem2 will accept compressed fastsanger.gz input data. Email help@genome.edu.au with any enquiries."
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