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add some user limits for popular tools #2118

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merged 1 commit into from
Aug 8, 2024
Merged

add some user limits for popular tools #2118

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16 changes: 16 additions & 0 deletions files/galaxy/dynamic_job_rules/production/total_perspective_vortex/tools.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -452,6 +452,8 @@ tools:
toolshed.g2.bx.psu.edu/repos/devteam/bamtools_filter/bamFilter/.*:
mem: 7.6
toolshed.g2.bx.psu.edu/repos/devteam/bowtie2/bowtie2/.*:
context:
max_concurrent_job_count_for_tool_user: 4
cores: 8
mem: 30.7
params:
Expand Down Expand Up @@ -1583,6 +1585,8 @@ tools:
if: input_size >= 0.5
fail: Too much data, please don't use the gubbins for this.
toolshed.g2.bx.psu.edu/repos/iuc/hisat2/hisat2/.*:
context:
max_concurrent_job_count_for_tool_user: 3
params:
tmp_dir: true
rules:
Expand Down Expand Up @@ -2440,6 +2444,8 @@ tools:
params:
singularity_enabled: true
toolshed.g2.bx.psu.edu/repos/iuc/rnaspades/rnaspades/.*:
context:
max_concurrent_job_count_for_tool_user: 3
params:
singularity_enabled: true
scheduling:
Expand Down Expand Up @@ -2649,6 +2655,8 @@ tools:
cores: 3
mem: 11.5
toolshed.g2.bx.psu.edu/repos/iuc/spades_biosyntheticspades/spades_biosyntheticspades/.*:
context:
max_concurrent_job_count_for_tool_user: 3
cores: 20
mem: 500
params:
Expand Down Expand Up @@ -2695,6 +2703,8 @@ tools:
if: input_size >= 60
fail: Too much data, please don't use Spades for this
toolshed.g2.bx.psu.edu/repos/iuc/spades_metaplasmidspades/spades_metaplasmidspades/.*:
context:
max_concurrent_job_count_for_tool_user: 3
cores: 20
mem: 500
params:
Expand Down Expand Up @@ -2737,6 +2747,8 @@ tools:
if: input_size >= 60
fail: Too much data, please don't use Spades for this
toolshed.g2.bx.psu.edu/repos/iuc/spades_plasmidspades/spades_plasmidspades/.*:
context:
max_concurrent_job_count_for_tool_user: 3
cores: 20
mem: 500
params:
Expand All @@ -2758,6 +2770,8 @@ tools:
if: input_size >= 60
fail: Too much data, please don't use Spades for this
toolshed.g2.bx.psu.edu/repos/iuc/spades_rnaviralspades/spades_rnaviralspades/.*:
context:
max_concurrent_job_count_for_tool_user: 3
cores: 10
mem: 250
scheduling:
Expand Down Expand Up @@ -3119,6 +3133,8 @@ tools:
toolshed.g2.bx.psu.edu/repos/nilesh/rseqc/rseqc_read_duplication/.*:
mem: 8
toolshed.g2.bx.psu.edu/repos/nml/metaspades/metaspades/.*:
context:
max_concurrent_job_count_for_tool_user: 3
cores: 16
mem: 61.4
params:
Expand Down
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