zebrafish_2D_segmentation

To do:

Designed to test basic segmentation methods on 2D time series of single channel Zebrafish (nuclear marker).

Goals: improve my understanding and familiarity with Python

Name		Name	Last commit message	Last commit date
Latest commit History 22 Commits
.gitattributes		.gitattributes
.gitignore		.gitignore
2D_Fish_Yolk.ipynb		2D_Fish_Yolk.ipynb
2D_to_3D_predictor.ipynb		2D_to_3D_predictor.ipynb
FishAge.pkl		FishAge.pkl
FishSegmentation.pkl		FishSegmentation.pkl
LICENSE		LICENSE
README.md		README.md
Zebrafish age predictor.ipynb		Zebrafish age predictor.ipynb
ZebrafishProcessing.ipynb		ZebrafishProcessing.ipynb
Zfish_segment_Triangle.ipynb		Zfish_segment_Triangle.ipynb
Zfish_segment_adaptive.ipynb		Zfish_segment_adaptive.ipynb
Zfish_segment_otsu_fz_2.ipynb		Zfish_segment_otsu_fz_2.ipynb
Zfish_segment_problem_subset.ipynb		Zfish_segment_problem_subset.ipynb
Zfish_segment_problem_subset2.ipynb		Zfish_segment_problem_subset2.ipynb
environment.yml		environment.yml
fiji_split_time_series.ijm		fiji_split_time_series.ijm
file_sorting.ipynb		file_sorting.ipynb
file_sorting_subsampling.ipynb		file_sorting_subsampling.ipynb
notebook.ipynb		notebook.ipynb

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