v1.0.9

• Add fix for bamtag when using dual indexes.

v1.0.8

• Add support for dual UMI indexes. Thanks @lbeltrame!

v1.0.7

• Ensure headers are not written when writing out a Series, to make us compatible with pandas > 0.24.
• Fix for deprecated .ix call, .loc is the new replacement. Thanks to @naumenko-sa.

v1.0.6

Hotfix for encoding issues.

v1.0.5

• Fix for cb_filter with python3. Thanks to @naumenko-sa for the fix.

v1.0.4

• Enable cb_histogram to be used on samples without UMIs.
• Enable filtering of cells during demultiplex_cells.
• Fix incorrect pandas.read_csv call with header=-1.

v1.0.3

• Python 3 support

v1.0.2

• Add demultiplex_cells subcommand to break a transformed FASTQ file into separate FASTQ files by cell.
• Future proofing for changes to panda's to_csv function.

v1.0.1

1.0.1

• Add support for click 7.0.

1.0.0

• Fix for min-length filtering with paired samples. Previously required only one read to be longer, fix requires both.
• Fix tests for fastqtagcount to use indexed BAM files.
• Support gzipped cellular barcode files.
• Support 10x V2 barcoding scheme. Thanks to @tomasgomes for the fix.
• Re-enable streaming for cellular barcode filtering.
• Add --umi_matrix option to fasttagcount. This outputs a non-umi-deduped matrix of counts, useful for QC.
• Support gzipped files for sb_filter, mb_filter and add_uid.