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This repository has been archived by the owner on Apr 19, 2023. It is now read-only.

Feature/publishing updates #289

Merged
merged 4 commits into from
Jan 20, 2021
Merged

Feature/publishing updates #289

merged 4 commits into from
Jan 20, 2021

Commits on Dec 8, 2020

  1. Add option to change the copy mode for the PUBLISH workflow. 

    - Options are now 'copy', 'link', 'symlink', etc. and are set in params.utils.publish.mode
- Default value is 'link'
- Fixes #265
    @cflerin
    cflerin committed Dec 8, 2020
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  2. Cleanup and streamline PUBLISH workflow 

    - Avoid duplicating the input file, this is replaced with a hard link
- Input/output file collisions are avoided by renaming the input file
before creating the link
- SC__PUBLISH_PROXY is removed from the workflow. The PUBLISH workflow
now only needs a single process (instead of two) to publish a file
    @cflerin
    cflerin committed Dec 8, 2020
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  3. Add CI test for parameter exploration 

    - Uses single_sample + two clustering parameters
    @cflerin
    cflerin committed Dec 8, 2020
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Commits on Jan 19, 2021

  1. Update parameter exp. CI to use nextflow 20.10.0

    @cflerin
    cflerin committed Jan 19, 2021
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