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Overview

This is a set of docker files for building and running opencb/cellbase.

It takes an hour or so to build and run cellbase manually, and this project automates all that.

Running cellbase includes the following:

  1. checking and compiling the code
  2. installing ensembl-api
  3. perl and a few cpan modules (JSON, mysql, ..)
  4. setting up mongodb
  5. cellbase download task
  6. cellbase build task
  7. cellbase load task
  8. running cellbase server

How to build

You'll need docker v1.7 installed. Have a look at the make.sh script for required steps.

Issues Tracking

You can report bugs or request new features at GitHub issue tracking.

Release Notes

Releases notes are available at GitHub releases.

Contributing

This is an open-source project. I appreciate any help and feeback! You can contribute in many different ways such as simple bug reporting and feature requests. Dependending on your skills you are more than welcome to fix bugs and work on new features, but make sure you pick an existing issue.

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dockerised opencb/cellbase

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  • Perl 50.3%
  • Shell 49.7%