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actions-user committed Jul 20, 2023
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1 change: 1 addition & 0 deletions pathways/WP4629/WP4629-datanodes.tsv
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Expand Up @@ -67,4 +67,5 @@ GAPDH GeneProduct ensembl:ENSG00000111640 ensembl:ENSG00000111640 ncbigene:2597
PGM GeneProduct ncbigene:5224 ensembl:ENSG00000164708 ncbigene:5224 hgnc.symbol:PGAM2 uniprot:P15259
TPI GeneProduct ncbigene:7167 ensembl:ENSG00000111669 ncbigene:7167 hgnc.symbol:TPI1 uniprot:U3KQF3;uniprot:U3KPS5;uniprot:P60174;uniprot:U3KPZ0;uniprot:V9HWK1
LACT GeneProduct ncbigene:0
AK GeneProduct eccode:2.7.4.3
Enzyme GeneProduct ncbigene:2821 glucose-6-phosphate isomerase ensembl:ENSG00000105220 ncbigene:2821 hgnc.symbol:GPI uniprot:A0A2U3TZU2;uniprot:K7ERK8;uniprot:P06744;uniprot:K7ENA0;uniprot:A0A2R8Y6C7;uniprot:K7EQ48;uniprot:A0A2R8YF08;uniprot:K7ELR7;uniprot:K7EIL4;uniprot:K7EP41;uniprot:K7EPY4;uniprot:A0A0G2JLI6;uniprot:K7ERC6
74 changes: 37 additions & 37 deletions pathways/WP4629/WP4629.gpml
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@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
<Pathway xmlns="http://pathvisio.org/GPML/2013a" Name="Aerobic glycolysis" Data-Source="WikiPathways" Version="WP4629_r127009" Author="[KJanssen, Egonw, AlexanderPico, DeSl, MaintBot, Eweitz, Finterly, Khanspers]" Last-Modified="20230718212422" Organism="Homo sapiens">
<Pathway xmlns="http://pathvisio.org/GPML/2013a" Name="Aerobic glycolysis" Data-Source="WikiPathways" Version="WP4629_r127017" Author="[KJanssen, Egonw, AlexanderPico, DeSl, MaintBot, Eweitz, Finterly, Khanspers, Ash iyer]" Last-Modified="20230719092515" Organism="Homo sapiens">
<Comment Source="WikiPathways-description">Glycolysis is the metabolic pathway that converts glucose C6H12O6, into pyruvate, CH3COCOO- and H+. The free energy released in this process is used to form the ATP and NADH.
This pathway was made during a research project at the UMCG, concerning changed glycolytic fluxes during the Warburg Effect. It is an extended version of the glycolysis pathway (WP534), and is descriptive of the content that is provided in the computer model of Shestov et al (2014).
A second version, containing the content of the model itself as well as the corresponding supplement and article, can be found here [https://www.wikipathways.org/index.php/Pathway:WP4628]
Expand Down Expand Up @@ -272,7 +272,7 @@ Referred article: Shestov et al., 2014 [https://www.ncbi.nlm.nih.gov/pubmed/2500
<Xref Database="ChEBI" ID="CHEBI:15422" />
</DataNode>
<DataNode TextLabel="ATPase" GraphId="e55fb" Type="GeneProduct" GroupRef="a749c">
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<Xref Database="" ID="" />
</DataNode>
<DataNode TextLabel="ADP" GraphId="a474c" Type="Metabolite" GroupRef="a749c">
Expand All @@ -298,7 +298,7 @@ Referred article: Shestov et al., 2014 [https://www.ncbi.nlm.nih.gov/pubmed/2500
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Expand Down Expand Up @@ -363,7 +363,7 @@ Referred article: Shestov et al., 2014 [https://www.ncbi.nlm.nih.gov/pubmed/2500
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Expand Down Expand Up @@ -832,6 +832,39 @@ Referred article: Shestov et al., 2014 [https://www.ncbi.nlm.nih.gov/pubmed/2500
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<bp:TITLE rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Pyruvate kinase. Classes of regulatory isoenzymes in mammalian tissues.</bp:TITLE>
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<bp:TERM xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">glycolysis/gluconeogenesis pathway</bp:TERM>
<bp:ID xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PW:0000025</bp:ID>
<bp:Ontology xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Pathway Ontology</bp:Ontology>
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Expand Down Expand Up @@ -865,44 +898,11 @@ Referred article: Shestov et al., 2014 [https://www.ncbi.nlm.nih.gov/pubmed/2500
<bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Thummel CS</bp:AUTHORS>
<bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Rutter J</bp:AUTHORS>
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<bp:ID xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PW:0000641</bp:ID>
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</Pathway>

18 changes: 11 additions & 7 deletions pathways/WP4629/WP4629.json
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Original file line number Diff line number Diff line change
Expand Up @@ -5191,7 +5191,7 @@
"whiteSpace": "pre",
"width": 60,
"wpType": "GeneProduct",
"x": 42.9732658941266,
"x": 41.697755690044914,
"y": 70.61656991739721,
"zIndex": 33010
},
Expand Down Expand Up @@ -6826,13 +6826,17 @@
"type": [
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"GeneProduct"
"Enzyme Nomenclature:2.7.4.3",
"GeneProduct",
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},
Expand Down Expand Up @@ -7188,7 +7192,7 @@
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},
{
Expand Down Expand Up @@ -8222,7 +8226,7 @@
"@base": "WP4629/"
}
],
"author": "[KJanssen, Egonw, AlexanderPico, DeSl, MaintBot, Eweitz, Finterly, Khanspers]",
"author": "[KJanssen, Egonw, AlexanderPico, DeSl, MaintBot, Eweitz, Finterly, Khanspers, Ash iyer]",
"comments": [
{
"content": "Glycolysis is the metabolic pathway that converts glucose C6H12O6, into pyruvate, CH3COCOO- and H+. The free energy released in this process is used to form the ATP and NADH.\r\nThis pathway was made during a research project at the UMCG, concerning changed glycolytic fluxes during the Warburg Effect. It is an extended version of the glycolysis pathway (WP534), and is descriptive of the content that is provided in the computer model of Shestov et al (2014).\r\nA second version, containing the content of the model itself as well as the corresponding supplement and article, can be found here [https://www.wikipathways.org/index.php/Pathway:WP4628]\r\n\r\nThis pathway was uploaded to provide a high resolution version to readers of the thesis.\r\nDescription and pathway adapted from [https://www.wikipathways.org/index.php/Pathway:WP534]\r\nReferred article: Shestov et al., 2014 [https://www.ncbi.nlm.nih.gov/pubmed/25009227]",
Expand Down Expand Up @@ -8336,7 +8340,7 @@
"ce1f3",
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],
"dataSourceVersion": "WP4629_r127009",
"dataSourceVersion": "WP4629_r127017",
"displayName": "Aerobic glycolysis",
"drawAs": "rect",
"fill": "white",
Expand All @@ -8346,7 +8350,7 @@
"height": 1039.7728653896197,
"id": "WP4629",
"kaavioType": "Group",
"lastModified": "20230718212422",
"lastModified": "20230719092515",
"name": "Aerobic glycolysis",
"organism": "Homo sapiens",
"padding": 5,
Expand All @@ -8355,7 +8359,7 @@
"stroke": "black",
"strokeWidth": 0,
"textAlign": "left",
"textContent": "Name: Aerobic glycolysis\nLast Modified: 20230718212422\nOrganism: Homo sapiens",
"textContent": "Name: Aerobic glycolysis\nLast Modified: 20230719092515\nOrganism: Homo sapiens",
"type": [
"Pathway",
"http://identifiers.org/pw/PW:0000025",
Expand Down
Binary file modified pathways/WP4629/WP4629.png
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