pathogenseq v1.0.1 #3
Workflow file for this run
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| name: nf-core AWS full size tests | |
| # This workflow is triggered on published releases. | |
| # It can be additionally triggered manually with GitHub actions workflow dispatch button. | |
| # It runs the -profile 'test_full' on AWS batch | |
| on: | |
| release: | |
| types: [published] | |
| workflow_dispatch: | |
| jobs: | |
| run-tower: | |
| name: Run AWS full tests | |
| if: github.repository == 'nf-core/pathogenseq' | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Launch workflow via tower | |
| uses: seqeralabs/action-tower-launch@v1 | |
| # TODO nf-core: You can customise AWS full pipeline tests as required | |
| # Add full size test data (but still relatively small datasets for few samples) | |
| # on the `test_full.config` test runs with only one set of parameters | |
| with: | |
| workspace_id: ${{ secrets.TOWER_WORKSPACE_ID }} | |
| access_token: ${{ secrets.TOWER_ACCESS_TOKEN }} | |
| compute_env: ${{ secrets.TOWER_COMPUTE_ENV }} | |
| workdir: s3://${{ secrets.AWS_S3_BUCKET }}/work/pathogenseq/work-${{ github.sha }} | |
| parameters: | | |
| { | |
| "outdir": "s3://${{ secrets.AWS_S3_BUCKET }}/pathogenseq/results-${{ github.sha }}" | |
| } | |
| profiles: test_full,aws_tower | |
| - uses: actions/upload-artifact@v3 | |
| with: | |
| name: Tower debug log file | |
| path: tower_action_*.log |