pathogenseq v1.0.3 #5

	name: nf-core AWS full size tests
	# This workflow is triggered on published releases.
	# It can be additionally triggered manually with GitHub actions workflow dispatch button.
	# It runs the -profile 'test_full' on AWS batch

	on:
	release:
	types: [published]
	workflow_dispatch:
	jobs:
	run-tower:
	name: Run AWS full tests
	if: github.repository == 'nf-core/pathogenseq'
	runs-on: ubuntu-latest
	steps:
	- name: Launch workflow via tower
	uses: seqeralabs/action-tower-launch@v1
	# TODO nf-core: You can customise AWS full pipeline tests as required
	# Add full size test data (but still relatively small datasets for few samples)
	# on the `test_full.config` test runs with only one set of parameters
	with:
	workspace_id: ${{ secrets.TOWER_WORKSPACE_ID }}
	access_token: ${{ secrets.TOWER_ACCESS_TOKEN }}
	compute_env: ${{ secrets.TOWER_COMPUTE_ENV }}
	workdir: s3://${{ secrets.AWS_S3_BUCKET }}/work/pathogenseq/work-${{ github.sha }}
	parameters: \|
	{
	"outdir": "s3://${{ secrets.AWS_S3_BUCKET }}/pathogenseq/results-${{ github.sha }}"
	}
	profiles: test_full,aws_tower
	- uses: actions/upload-artifact@v3
	with:
	name: Tower debug log file
	path: tower_action_*.log

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