Skip to content

pathogenseq v1.1.0

Latest
Latest
Compare
Choose a tag to compare
@xiaoli-dong xiaoli-dong released this 26 Feb 22:58
· 3 commits to main since this release
v1.1.0
5a4a403
This commit was created on GitHub.com and signed with GitHub’s verified signature.
GPG key ID: B5690EEEBB952194
Learn about vigilant mode.
  • Fixed a bug associated with Polypolish and polca short read polish process. This was caused by the mis-association of the input reads and contigs during the mapping. It means the reads mapped to the contigs from the other samples.
  • Fixed a bug associated with the long reads assembly. The pipeline would crash when there were no short reads available.
  • Updated the versions of the following tools:
    • samtools (1.16.1 -> 1.19.2)
    • fastqc (0.11.9->0.12.1)
    • mlst (2.19.0 -> 2.23.0)
    • bakta (1.6.1->1.9.2)
    • nanoplot(1.41.0->1.41.6)
Assets 2
Loading