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pathogenseq v1.1.0

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@xiaoli-dong xiaoli-dong released this 26 Feb 22:58
· 3 commits to main since this release
5a4a403
  • Fixed a bug associated with Polypolish and polca short read polish process. This was caused by the mis-association of the input reads and contigs during the mapping. It means the reads mapped to the contigs from the other samples.
  • Fixed a bug associated with the long reads assembly. The pipeline would crash when there were no short reads available.
  • Updated the versions of the following tools:
    • samtools (1.16.1 -> 1.19.2)
    • fastqc (0.11.9->0.12.1)
    • mlst (2.19.0 -> 2.23.0)
    • bakta (1.6.1->1.9.2)
    • nanoplot(1.41.0->1.41.6)