The Natural Products Atlas

Hosted at www.npatlas.org

AUTHOR: Jeff van Santen

Contained is a bare bones docker-compose deployment for the NP Atlas. The required Docker images are currently not publically available.

This repo exists primarily for Issue Tracking.

Environment files

As specified in the docker.compose.yml two environment files need to be configured. Here are the required files for the REST api and the webapp, respectively.

api.env

LOG_LEVEL=debug
MODULE_NAME=atlas.main
DATABASE_URL=postgresql://jvansan:jvansan@127.0.0.1/np_atlas_2020_06
#AUTH_DATABASE_URL=postgresql://jvansan:jvansan@127.0.0.1/authentication # Only used with DEV_DEPLOYMENT == true
DEV_DEPLOYMENT=false
REDIS_URL=redis

app.env

ATLAS_APIKEY=<REPLACEME>
ATLAS_URL=http://api/api/v1
ATLAS_VERSION=2020_06
SECRET_KEY=<REPLACEME>
DEV=false
ALLOWED_HOSTS=<REPLACEME>
EMAIL_HOST_USER=<REPLACEME>
EMAIL_HOST_PASSWORD=<REPLACEME>