Subtype-specific Cellular Proliferation Signature Pilot Study

Code repository for manuscript titled "A cancer proliferation gene signature supervised by Ki-67 strata specific to Luminal A, estrogen receptor-positive, and HER2-negative ductal carcinomas" (accepted August 2022)

Author: @ydavidchen

Research Aims

1. To identify a gene signature supervised by Ki-67
2. To assess the biological and clinical validity of the gene signature

Technical Notes

This is the code base for the manuscript. Only the scripts relevant to the final analyses (paper figures) are included. Data cleaning, data loading, and exploratory data analysis (EDA) are not included. Wherever applicable, any path variables and API keys/credentials are hidden.